HL_5HKV_069

3D structure

PDB id

5HKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAAGCUUGCUUG

Length

12 nucleotides

Bulged bases

5HKV|1|X|C|284, 5HKV|1|X|U|285, 5HKV|1|X|U|286, 5HKV|1|X|U|290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HKV_069 not in the Motif Atlas

Homologous match to HL_4WF9_068

Geometric discrepancy: 0.2176

The information below is about HL_4WF9_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76195.1

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5HKV|1|X|C|280
5HKV|1|X|A|281
5HKV|1|X|A|282
5HKV|1|X|G|283
5HKV|1|X|C|284
5HKV|1|X|U|285
5HKV|1|X|U|286
5HKV|1|X|G|287
5HKV|1|X|C|288
5HKV|1|X|U|289
5HKV|1|X|U|290
5HKV|1|X|G|291

Current chains

Chain X

23s ribosomal RNA

Nearby chains