HL_5HL7_001

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GACGAUAU

Length

8 nucleotides

Bulged bases

5HL7|1|X|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_001 not in the Motif Atlas

Geometric match to HL_4WF9_001

Geometric discrepancy: 0.1917

The information below is about HL_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08550.2

Basepair signature

cWW-F-F-F-cSH

Number of instances in this motif group

3

Unit IDs

5HL7|1|X|G|67
5HL7|1|X|A|68
5HL7|1|X|C|69
5HL7|1|X|G|70
5HL7|1|X|A|71
5HL7|1|X|U|72
5HL7|1|X|A|73
5HL7|1|X|U|74

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29