HL_5HL7_010

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5HL7|1|X|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1378

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

5HL7|1|X|C|348
5HL7|1|X|U|349
5HL7|1|X|G|350
5HL7|1|X|G|351
5HL7|1|X|A|352
5HL7|1|X|A|353
5HL7|1|X|A|354
5HL7|1|X|G|355

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L24