HL_5HL7_019

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CAGUAAAUG

Length

9 nucleotides

Bulged bases

5HL7|1|X|A|658, 5HL7|1|X|A|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_019 not in the Motif Atlas

Homologous match to HL_4WF9_019

Geometric discrepancy: 0.2932

The information below is about HL_4WF9_019

Detailed Annotation

Other HL

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

5HL7|1|X|C|654
5HL7|1|X|A|655
5HL7|1|X|G|656
5HL7|1|X|U|657
5HL7|1|X|A|658
5HL7|1|X|A|659
5HL7|1|X|A|660
5HL7|1|X|U|661
5HL7|1|X|G|662

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4