HL_5HL7_026

3D structure

PDB id

5HL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

ACGAGGGUUACCGAAU

Length

16 nucleotides

Bulged bases

5HL7|1|X|G|938

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5HL7_026 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3486

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5HL7|1|X|A|920
5HL7|1|X|C|921
5HL7|1|X|G|922
5HL7|1|X|A|923
5HL7|1|X|G|924
5HL7|1|X|G|925
5HL7|1|X|G|938
5HL7|1|X|U|939
5HL7|1|X|U|940
5HL7|1|X|A|941
5HL7|1|X|C|942
5HL7|1|X|C|943
5HL7|1|X|G|944
5HL7|1|X|A|945
5HL7|1|X|A|946
5HL7|1|X|U|947

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L25