HL_5HR7_002
3D structure
- PDB id
- 5HR7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray crystal structure of C118A RlmN from Escherichia coli with cross-linked in vitro transcribed tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCUUUCACG
- Length
- 9 nucleotides
- Bulged bases
- 5HR7|1|C|U|33, 5HR7|1|C|U|34, 5HR7|1|C|U|35, 5HR7|1|C|A|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5HR7_002 not in the Motif Atlas
- Homologous match to HL_5HR7_005
- Geometric discrepancy: 0.0145
- The information below is about HL_5HR7_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50006.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
5HR7|1|C|C|31
5HR7|1|C|C|32
5HR7|1|C|U|33
5HR7|1|C|U|34
5HR7|1|C|U|35
5HR7|1|C|C|36
5HR7|1|C|A|37
5HR7|1|C|C|38
5HR7|1|C|G|39
Current chains
- Chain C
- tRNA Glu
Nearby chains
- Chain B
- Dual-specificity RNA methyltransferase RlmN
Coloring options: