3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GUUUAUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5I4L_038 not in the Motif Atlas
Homologous match to HL_5TBW_038
Geometric discrepancy: 0.048
The information below is about HL_5TBW_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75033.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

5I4L|1|1|G|1719
5I4L|1|1|U|1720
5I4L|1|1|U|1721
5I4L|1|1|U|1722
5I4L|1|1|A|1723
5I4L|1|1|U|1724
5I4L|1|1|C|1725

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M9
60S ribosomal protein L19-A
Chain Q3
60S ribosomal protein L43-A

Coloring options:


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