3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CACCUUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5I4L_039 not in the Motif Atlas
Homologous match to HL_8P9A_150
Geometric discrepancy: 0.3646
The information below is about HL_8P9A_150
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25967.2
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

5I4L|1|1|C|1759
5I4L|1|1|A|1760
5I4L|1|1|C|1761
5I4L|1|1|C|1762
5I4L|1|1|U|1763
5I4L|1|1|U|1764
5I4L|1|1|U|1765
5I4L|1|1|G|1766

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M9
60S ribosomal protein L19-A
Chain N2
60S ribosomal protein L22-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2251 s