HL_5I4L_049

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

5I4L|1|1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.0723

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5I4L|1|1|G|2253
5I4L|1|1|U|2254
5I4L|1|1|A|2255
5I4L|1|1|A|2256
5I4L|1|1|C|2257
5I4L|1|1|U|2258
5I4L|1|1|A|2259
5I4L|1|1|U|2260
5I4L|1|1|G|2261
5I4L|1|1|A|2262
5I4L|1|1|C|2263

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain E0

40S ribosomal protein S30-A