3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UCUAAUUAG
Length
9 nucleotides
Bulged bases
5I4L|1|1|U|2298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5I4L_050 not in the Motif Atlas
Homologous match to HL_5TBW_050
Geometric discrepancy: 0.0629
The information below is about HL_5TBW_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

5I4L|1|1|U|2292
5I4L|1|1|C|2293
5I4L|1|1|U|2294
5I4L|1|1|A|2295
5I4L|1|1|A|2296
5I4L|1|1|U|2297
5I4L|1|1|U|2298
5I4L|1|1|A|2299
5I4L|1|1|G|2300

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain N3
60S ribosomal protein L23-A

Coloring options:


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