HL_5I4L_052

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGACAUAGUUU

Length

11 nucleotides

Bulged bases

5I4L|1|1|U|2501

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_052 not in the Motif Atlas

Homologous match to HL_5TBW_052

Geometric discrepancy: 0.1326

The information below is about HL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59851.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5I4L|1|1|A|2441
5I4L|1|1|G|2442
5I4L|1|1|A|2443
5I4L|1|1|C|2444
5I4L|1|1|A|2445
5I4L|1|1|U|2501
5I4L|1|1|A|2502
5I4L|1|1|G|2503
5I4L|1|1|U|2504
5I4L|1|1|U|2505
5I4L|1|1|U|2506

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O6

60S ribosomal protein L36-A