HL_5I4L_074

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

5I4L|1|2|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_074 not in the Motif Atlas

Homologous match to HL_4V88_187

Geometric discrepancy: 0.3957

The information below is about HL_4V88_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38701.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5I4L|1|2|C|70
5I4L|1|2|A|71
5I4L|1|2|A|72
5I4L|1|2|U|73
5I4L|1|2|U|74
5I4L|1|2|U|75
5I4L|1|2|A|76
5I4L|1|2|U|77
5I4L|1|2|A|78
5I4L|1|2|C|79
5I4L|1|2|A|80
5I4L|1|2|G|81

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A