HL_5I4L_094

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

5I4L|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_094 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.105

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5I4L|1|2|G|997
5I4L|1|2|A|998
5I4L|1|2|U|999
5I4L|1|2|C|1000
5I4L|1|2|A|1001
5I4L|1|2|G|1002
5I4L|1|2|A|1003
5I4L|1|2|U|1004
5I4L|1|2|A|1005
5I4L|1|2|C|1006
5I4L|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-B

Chain D6

40S ribosomal protein S26-B