HL_5I4L_150

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

5I4L|1|5|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_150 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.0892

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5I4L|1|5|G|1680
5I4L|1|5|U|1681
5I4L|1|5|U|1682
5I4L|1|5|A|1683
5I4L|1|5|U|1684
5I4L|1|5|C|1685
5I4L|1|5|U|1686
5I4L|1|5|U|1687
5I4L|1|5|U|1688

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m9

60S ribosomal protein L19-A

Chain n2

60S ribosomal protein L22-A