HL_5IB7_086

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_086 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2979

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5IB7|1|14|G|2302
5IB7|1|14|G|2303
5IB7|1|14|G|2304
5IB7|1|14|A|2305
5IB7|1|14|C|2306
5IB7|1|14|G|2307
5IB7|1|14|G|2308
5IB7|1|14|A|2309
5IB7|1|14|A|2310
5IB7|1|14|A|2311
5IB7|1|14|U|2312
5IB7|1|14|C|2313
5IB7|1|14|C|2314

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 49

50S ribosomal protein L5