HL_5IB7_182
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 5IB7|1|1H|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IB7_182 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1524
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5IB7|1|1H|G|1910
5IB7|1|1H|U|1911
5IB7|1|1H|A|1912
5IB7|1|1H|A|1913
5IB7|1|1H|C|1914
5IB7|1|1H|U|1915
5IB7|1|1H|A|1916
5IB7|1|1H|U|1917
5IB7|1|1H|A|1918
5IB7|1|1H|A|1919
5IB7|1|1H|C|1920
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1K
- Transfer RNA; tRNA
- Chain 2K
- Transfer RNA; tRNA
- Chain 4K
- mRNA
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