HL_5IB7_188

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5IB7|1|1H|A|2268, 5IB7|1|1H|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_188 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0499

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5IB7|1|1H|C|2264
5IB7|1|1H|U|2265
5IB7|1|1H|A|2266
5IB7|1|1H|A|2267
5IB7|1|1H|A|2268
5IB7|1|1H|A|2269
5IB7|1|1H|G|2270
5IB7|1|1H|G|2271
5IB7|1|1H|U|2272
5IB7|1|1H|A|2273
5IB7|1|1H|A|2274
5IB7|1|1H|C|2275
5IB7|1|1H|G|2276

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27