HL_5IB7_210
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- GACUUUUAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IB7_210 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.1248
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5IB7|1|1L|G|30
5IB7|1|1L|A|31
5IB7|1|1L|C|32
5IB7|1|1L|U|33
5IB7|1|1L|U|34
5IB7|1|1L|U|35
5IB7|1|1L|U|36
5IB7|1|1L|A|37
5IB7|1|1L|A|38
5IB7|1|1L|U|39
5IB7|1|1L|C|40
Current chains
- Chain 1L
- tRNALys
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3A
- 30S ribosomal protein S12
- Chain 4L
- mRNA
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