HL_5IB7_213
3D structure
- PDB id
- 5IB7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.99 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5IB7|1|2K|U|34
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IB7_213 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.0535
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5IB7|1|2K|G|32
5IB7|1|2K|OMC|33
5IB7|1|2K|U|34
5IB7|1|2K|C|35
5IB7|1|2K|A|36
5IB7|1|2K|U|37
5IB7|1|2K|A|38
5IB7|1|2K|A|39
5IB7|1|2K|C|40
Current chains
- Chain 2K
- tRNAfMet
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3K
- Transfer RNA; tRNA
- Chain 4K
- mRNA
- Chain 8E
- 30S ribosomal protein S9
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