HL_5IB8_036

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

5IB8|1|14|U|161

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_036 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3446

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5IB8|1|14|C|153
5IB8|1|14|G|154
5IB8|1|14|C|155
5IB8|1|14|U|161
5IB8|1|14|U|162
5IB8|1|14|G|171
5IB8|1|14|C|172
5IB8|1|14|G|173

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain F5

50S ribosomal protein L28