HL_5IB8_057

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

5IB8|1|14|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_057 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3701

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5IB8|1|14|C|884
5IB8|1|14|C|885
5IB8|1|14|C|886
5IB8|1|14|A|887
5IB8|1|14|C|888
5IB8|1|14|C|889
5IB8|1|14|A|890
5IB8|1|14|G|892

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 4A

30S ribosomal protein S13