HL_5IB8_081

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5IB8|1|14|A|2030, 5IB8|1|14|A|2031, 5IB8|1|14|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_081 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0769

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5IB8|1|14|G|2027
5IB8|1|14|U|2028
5IB8|1|14|G|2029
5IB8|1|14|A|2030
5IB8|1|14|A|2031
5IB8|1|14|G|2032
5IB8|1|14|A|2033
5IB8|1|14|U|2034
5IB8|1|14|G|2035
5IB8|1|14|C|2036

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3