HL_5IB8_085

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5IB8|1|14|A|2268, 5IB8|1|14|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_085 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0644

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5IB8|1|14|C|2264
5IB8|1|14|U|2265
5IB8|1|14|A|2266
5IB8|1|14|A|2267
5IB8|1|14|A|2268
5IB8|1|14|A|2269
5IB8|1|14|G|2270
5IB8|1|14|G|2271
5IB8|1|14|U|2272
5IB8|1|14|A|2273
5IB8|1|14|A|2274
5IB8|1|14|C|2275
5IB8|1|14|G|2276

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 45

50S ribosomal protein L16

Chain E5

50S ribosomal protein L27