HL_5IB8_119

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_119 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3416

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5IB8|1|1G|G|861
5IB8|1|1G|C|862
5IB8|1|1G|U|863
5IB8|1|1G|A|864
5IB8|1|1G|A|865
5IB8|1|1G|C|866
5IB8|1|1G|G|867
5IB8|1|1G|C|868

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 42

30S ribosomal protein S5

Chain 72

30S ribosomal protein S8