HL_5IB8_131

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5IB8|1|1G|U|1450, 5IB8|1|1G|A|1451, 5IB8|1|1G|G|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_131 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.226

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

5IB8|1|1G|C|1449
5IB8|1|1G|U|1450
5IB8|1|1G|A|1451
5IB8|1|1G|C|1452
5IB8|1|1G|G|1453
5IB8|1|1G|G|1454

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20