HL_5IB8_142

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5IB8|1|1H|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_142 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.0746

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5IB8|1|1H|U|305
5IB8|1|1H|U|306
5IB8|1|1H|G|307
5IB8|1|1H|G|308
5IB8|1|1H|G|309
5IB8|1|1H|A|310
5IB8|1|1H|A|311
5IB8|1|1H|G|312

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain G8

50S ribosomal protein L24