HL_5IB8_169

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5IB8|1|1H|C|1493, 5IB8|1|1H|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_169 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.2043

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5IB8|1|1H|G|1492
5IB8|1|1H|C|1493
5IB8|1|1H|A|1494
5IB8|1|1H|A|1495
5IB8|1|1H|A|1496
5IB8|1|1H|U|1497
5IB8|1|1H|C|1498

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2