HL_5IB8_172

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5IB8|1|1H|A|1614, 5IB8|1|1H|A|1616, 5IB8|1|1H|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_172 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0797

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5IB8|1|1H|C|1612
5IB8|1|1H|G|1613
5IB8|1|1H|A|1614
5IB8|1|1H|C|1615
5IB8|1|1H|A|1616
5IB8|1|1H|C|1617
5IB8|1|1H|A|1618
5IB8|1|1H|G|1619

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain P8

50S ribosomal protein L34