HL_5IB8_187

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_187 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.3348

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5IB8|1|1H|G|2303
5IB8|1|1H|G|2304
5IB8|1|1H|A|2305
5IB8|1|1H|C|2306
5IB8|1|1H|G|2307
5IB8|1|1H|G|2308
5IB8|1|1H|A|2309
5IB8|1|1H|A|2310
5IB8|1|1H|A|2311
5IB8|1|1H|U|2312
5IB8|1|1H|C|2313

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 41

50S ribosomal protein L5