HL_5IB8_214
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5IB8|1|2L|U|34
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IB8_214 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.085
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 50
Unit IDs
5IB8|1|2L|G|32
5IB8|1|2L|OMC|33
5IB8|1|2L|U|34
5IB8|1|2L|C|35
5IB8|1|2L|A|36
5IB8|1|2L|U|37
5IB8|1|2L|A|38
5IB8|1|2L|A|39
5IB8|1|2L|C|40
Current chains
- Chain 2L
- tRNAfMet
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3L
- Transfer RNA; tRNA
- Chain 4L
- mRNA
- Chain 82
- 30S ribosomal protein S9
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