HL_5IBB_024

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5IBB|1|13|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0862

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

5IBB|1|13|G|1089
5IBB|1|13|U|1090
5IBB|1|13|U|1091
5IBB|1|13|A|1092
5IBB|1|13|A|1093
5IBB|1|13|G|1094
5IBB|1|13|U|1095
5IBB|1|13|C|1096

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1E

30S ribosomal protein S2

Chain 6E

30S ribosomal protein S7