HL_5IBB_163

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CAGCUCACUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_163 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3792

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

5IBB|1|1H|C|1053
5IBB|1|1H|A|1054
5IBB|1|1H|G|1055
5IBB|1|1H|C|1100
5IBB|1|1H|U|1101
5IBB|1|1H|C|1102
5IBB|1|1H|A|1103
5IBB|1|1H|C|1104
5IBB|1|1H|U|1105
5IBB|1|1H|G|1106

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains