HL_5IBB_188

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5IBB|1|1H|A|2268, 5IBB|1|1H|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_188 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0507

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5IBB|1|1H|C|2264
5IBB|1|1H|U|2265
5IBB|1|1H|A|2266
5IBB|1|1H|A|2267
5IBB|1|1H|A|2268
5IBB|1|1H|A|2269
5IBB|1|1H|G|2270
5IBB|1|1H|G|2271
5IBB|1|1H|U|2272
5IBB|1|1H|A|2273
5IBB|1|1H|A|2274
5IBB|1|1H|C|2275
5IBB|1|1H|G|2276

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27