HL_5IBB_237

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

5IBB|1|1H|U|1535, 5IBB|1|1H|A|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_237 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.3514

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5IBB|1|1H|C|1532
5IBB|1|1H|C|1533
5IBB|1|1H|G|1534
5IBB|1|1H|U|1535
5IBB|1|1H|A|1536
5IBB|1|1H|C|1537
5IBB|1|1H|G|1538
5IBB|1|1H|G|1539

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains