HL_5IEM_003

3D structure

PDB id

5IEM (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the 5'-terminal hairpin of the 7SK snRNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5IEM|3|A|U|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IEM_003 not in the Motif Atlas

Geometric match to HL_6DLR_002

Geometric discrepancy: 0.2367

The information below is about HL_6DLR_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

5IEM|3|A|C|25
5IEM|3|A|U|26
5IEM|3|A|U|27
5IEM|3|A|C|28
5IEM|3|A|G|29
5IEM|3|A|G|30

Current chains

Chain A

7SK snRNA

Nearby chains