HL_5IMQ_012

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5IMQ|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_012 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.2139

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IMQ|1|A|G|259
5IMQ|1|A|G|260
5IMQ|1|A|U|261
5IMQ|1|A|A|262
5IMQ|1|A|A|263
5IMQ|1|A|U|264
5IMQ|1|A|G|265
5IMQ|1|A|G|266
5IMQ|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S17

Chain X

30S ribosomal protein S20