HL_5IMQ_020

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_020 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.2044

The information below is about HL_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5IMQ|1|A|G|617
5IMQ|1|A|C|618
5IMQ|1|A|U|619
5IMQ|1|A|C|620
5IMQ|1|A|A|621
5IMQ|1|A|A|622
5IMQ|1|A|C|623

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S4

Chain T

30S ribosomal protein S16