HL_5IMQ_040

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

5IMQ|1|D|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_040 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.3415

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5IMQ|1|D|C|87
5IMQ|1|D|G|88
5IMQ|1|D|G|89
5IMQ|1|D|U|90
5IMQ|1|D|A|91
5IMQ|1|D|G|92
5IMQ|1|D|C|93
5IMQ|1|D|G|94
5IMQ|1|D|G|95

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L23

Chain q

50S ribosomal protein L24

Chain t

50S ribosomal protein L29