HL_5IMQ_046
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCGGCGAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_046 not in the Motif Atlas
- Geometric match to HL_8H9D_001
- Geometric discrepancy: 0.3343
- The information below is about HL_8H9D_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 8
Unit IDs
5IMQ|1|D|G|245
5IMQ|1|D|C|246
5IMQ|1|D|G|247
5IMQ|1|D|G|248
5IMQ|1|D|C|249
5IMQ|1|D|G|250
5IMQ|1|D|A|251
5IMQ|1|D|G|252
5IMQ|1|D|C|253
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain h
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L31
- Chain z
- 50S ribosomal protein L35
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