HL_5IMQ_047
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUUGUC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_047 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.1967
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
5IMQ|1|D|G|270|||J
5IMQ|1|D|C|270|||K
5IMQ|1|D|U|270|||L
5IMQ|1|D|U|270|||M
5IMQ|1|D|G|270|||N
5IMQ|1|D|U|270|||O
5IMQ|1|D|C|270|||P
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain v
- 50S ribosomal protein L31
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