HL_5IMQ_048

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5IMQ|1|D|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_048 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.225

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5IMQ|1|D|U|305
5IMQ|1|D|U|306
5IMQ|1|D|G|307
5IMQ|1|D|G|308
5IMQ|1|D|G|309
5IMQ|1|D|A|310
5IMQ|1|D|A|311
5IMQ|1|D|G|312

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L24