HL_5IMQ_060
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 5IMQ|1|D|U|747, 5IMQ|1|D|A|751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_060 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.2609
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5IMQ|1|D|G|744
5IMQ|1|D|G|745
5IMQ|1|D|A|746
5IMQ|1|D|U|747
5IMQ|1|D|G|748
5IMQ|1|D|C|749
5IMQ|1|D|A|750
5IMQ|1|D|A|751
5IMQ|1|D|A|752
5IMQ|1|D|C|753
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L3
- Chain o
- 50S ribosomal protein L22
- Chain w
- 50S ribosomal protein L32
- Chain y
- 50S ribosomal protein L34
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