HL_5IMQ_061

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5IMQ|1|D|A|781, 5IMQ|1|D|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_061 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.3622

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

5IMQ|1|D|U|779
5IMQ|1|D|G|780
5IMQ|1|D|A|781
5IMQ|1|D|A|782
5IMQ|1|D|A|783
5IMQ|1|D|A|784
5IMQ|1|D|G|785

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2