HL_5IMQ_064
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUAACG
- Length
- 8 nucleotides
- Bulged bases
- 5IMQ|1|D|U|958, 5IMQ|1|D|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_064 not in the Motif Atlas
- Homologous match to HL_4WF9_027
- Geometric discrepancy: 0.1827
- The information below is about HL_4WF9_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.3
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 397
Unit IDs
5IMQ|1|D|C|955
5IMQ|1|D|G|956
5IMQ|1|D|A|957
5IMQ|1|D|U|958
5IMQ|1|D|A|959
5IMQ|1|D|A|960
5IMQ|1|D|C|961
5IMQ|1|D|G|962
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain i
- 50S ribosomal protein L16
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