HL_5IMQ_069

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_069 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.2276

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5IMQ|1|D|G|1281
5IMQ|1|D|U|1282
5IMQ|1|D|G|1283
5IMQ|1|D|A|1284
5IMQ|1|D|G|1285
5IMQ|1|D|A|1286
5IMQ|1|D|A|1287
5IMQ|1|D|U|1288
5IMQ|1|D|C|1289

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L17

Chain o

50S ribosomal protein L22

Chain w

50S ribosomal protein L32