HL_5IMQ_076

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5IMQ|1|D|A|1614, 5IMQ|1|D|A|1616, 5IMQ|1|D|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_076 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1961

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

5IMQ|1|D|C|1612
5IMQ|1|D|G|1613
5IMQ|1|D|A|1614
5IMQ|1|D|C|1615
5IMQ|1|D|A|1616
5IMQ|1|D|C|1617
5IMQ|1|D|A|1618
5IMQ|1|D|G|1619

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L22

Chain y

50S ribosomal protein L34