HL_5IMQ_086
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5IMQ|1|D|A|2030, 5IMQ|1|D|A|2031, 5IMQ|1|D|G|2032, 5IMQ|1|D|U|2034, 5IMQ|1|D|G|2035
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_086 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.3388
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5IMQ|1|D|G|2027
5IMQ|1|D|U|2028
5IMQ|1|D|G|2029
5IMQ|1|D|A|2030
5IMQ|1|D|A|2031
5IMQ|1|D|G|2032
5IMQ|1|D|A|2033
5IMQ|1|D|U|2034
5IMQ|1|D|G|2035
5IMQ|1|D|C|2036
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L3
- Chain w
- 50S ribosomal protein L32
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