HL_5IMQ_088

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUCGGAUGGG

Length

10 nucleotides

Bulged bases

5IMQ|1|D|G|2210, 5IMQ|1|D|U|2213, 5IMQ|1|D|G|2215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_088 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3452

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5IMQ|1|D|C|2207
5IMQ|1|D|U|2208
5IMQ|1|D|C|2209
5IMQ|1|D|G|2210
5IMQ|1|D|G|2211
5IMQ|1|D|A|2212
5IMQ|1|D|U|2213
5IMQ|1|D|G|2215
5IMQ|1|D|G|2216
5IMQ|1|D|G|2217

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L31