HL_5IMQ_096

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_096 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2359

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5IMQ|1|D|C|2471
5IMQ|1|D|G|2472
5IMQ|1|D|U|2473
5IMQ|1|D|C|2474
5IMQ|1|D|C|2475
5IMQ|1|D|A|2476
5IMQ|1|D|C|2477
5IMQ|1|D|A|2478
5IMQ|1|D|G|2479

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain B

Elongation factor 4