HL_5IMQ_100

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_100 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2034

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

5IMQ|1|D|C|2658
5IMQ|1|D|G|2659
5IMQ|1|D|A|2660
5IMQ|1|D|G|2661
5IMQ|1|D|A|2662
5IMQ|1|D|G|2663

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain B

Elongation factor 4

Chain e

50S ribosomal protein L6